Basic Information | |
---|---|
Taxon OID | 3300021170 Open in IMG/M |
Scaffold ID | Ga0210400_10000231 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 69046 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (70.18%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025089 | Metagenome / Metatranscriptome | 203 | Y |
F103602 | Metagenome / Metatranscriptome | 101 | N |
F105555 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210400_1000023144 | F103602 | N/A | MDIDIKERIAALCAKVIAAPDGSEELSCTMEELRSALSEHAKNMRRQIVNLRQKGFPHSDDTGER |
Ga0210400_1000023146 | F105555 | AGGAGG | MKIKEEPKQVRLPHSNNPSRKKHYEAPKFTILGRDQAEAQLVASARAGDRDAERMLVLASGLVSKTDKNCR |
Ga0210400_1000023148 | F025089 | GAGG | MSSVPLAPIQRLIHDVTGDLHVVVAASKEGYRETALEACLLAKEKLQAIREELLRPEPGIADPRHDYDS |
⦗Top⦘ |