Basic Information | |
---|---|
Taxon OID | 3300021170 Open in IMG/M |
Scaffold ID | Ga0210400_10000172 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 82006 |
Total Scaffold Genes | 81 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (65.43%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000512 | Metagenome / Metatranscriptome | 1064 | Y |
F000703 | Metagenome / Metatranscriptome | 928 | Y |
F000781 | Metagenome / Metatranscriptome | 895 | Y |
F001959 | Metagenome / Metatranscriptome | 611 | Y |
F002853 | Metagenome / Metatranscriptome | 526 | Y |
F073888 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210400_1000017216 | F000781 | N/A | MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDISIADPSAARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPAAVAGGGATGPAPLPSSGSGVFPNGVPRGGNGFGVHPGSRITRQTIL |
Ga0210400_1000017217 | F000703 | AGG | MQIREYQESDLAALRAIHAAQGFDYALPDLRNPLFVTKLVLAQDAASSVVGAQHAAPLQQPTLGEDEPRECILRGAEEPVSDRIIGAALLRLTAEAYLLLDPKAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPLIAGKFGKRIARLGWLRDDTWTPYCKKLSEGK |
Ga0210400_1000017218 | F002853 | AGGAGG | MGRGAQSQTRQLTDQERANIDALNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQSAQNRLARTRNSAGFSELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGIDSNLLGRTLGIPAELLNVRANASRSNGGGFFSALGSGLGSTLGALPGAFF |
Ga0210400_1000017221 | F073888 | GGA | MLTKYWIHPAELTIVILLALAIYFSWRADQRDRAQLASELAAAKQLLAAADARQHDRDNQLAQTLATLATEKRTIVTPAQIIRDLPAQLPLPSPIVLQSAPALPNSPTPKANAVIPAEDLKPLYDFTIDCKSCQAKLATAQSDLADERQKTTALTRERDDALRIARGGNVWRRITRAAKWFLIGAAAGAVAAKAAR |
Ga0210400_100001723 | F000512 | N/A | MILVVRETHDTPETAAHRLERAGGINRYGEANYRAMWGWNRLAWIGGKFEDRDEHGELLRERVELRWEPKYPAVNRWHIERWLPPETYGSPRAWYAQTSERENGISIPALGPYPSRGEYEHCFTLESSRGEFVQLTATAAEHIARAIEWSRTFPHAKHRAGLYGREAHEDRSYEDWAFDQLDDAVPAFHKQPFVTVA |
Ga0210400_1000017235 | F001959 | GGAGG | MKNLDSVFAAYMVGWTVFFVYYISVARRTAALRDEIERLKNSLNRGK |
⦗Top⦘ |