Scaffold Ga0210406_10046013

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10046013
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3840
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015917	Metagenome / Metatranscriptome	251	Y
F060654	Metagenome / Metatranscriptome	132	N
F061074	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_100460131	F015917	AGGAG	MEKPKTVRVGNITVTQISPKEREILAQKVKERHDRLRNRYREIHKKVVDWVSYSVEQGSVYVCIRFMDKTEFSLQFSPQILTDSIDLADMSTGNFKMIREYYRKADK
Ga0210406_100460133	F061074	GAGG	MASKRKNPLERHPHCRGRKCRSVTWDSLHISIDGPHARYTKGHRGFYNGDIDGCIDDFLVVLKCEARRLLRECAKQTPALKQFNLKFA
Ga0210406_100460134	F060654	AGGA	MRHKGVEYPELQGKTVKRVWFKDDDEFTALFLEFEDNTRARFDLRAAVTFERAPEMCSIASNGDLGDWRDLRAQRLAPHES