Scaffold Ga0210406_10011444

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10011444
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8656
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005312	Metagenome / Metatranscriptome	405	Y
F009363	Metagenome / Metatranscriptome	319	Y
F079984	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_100114443	F005312	N/A	MLGRRIIVTYRAGDIILPATGNLAADSGKSIFLEESYKQKGSIKTFRWEIPYPCIVEMNECPEIPKLSASVNEARETSAESAQAATLELKNRLA
Ga0210406_100114444	F009363	GGAGG	VAVRVCPHCKTEISAPVAAARSNDIECPKCGKRLEVAPGSRTISTLCGLAAGAIVWRLSNDSTGDLGGVLPTLYAFLAFGIVSPLVLMFTANLRNAPLVAAPEPVHAPSPAGHGTSAHGAAHH
Ga0210406_100114446	F079984	N/A	LNEIAFLHPIVVDFCVEKLRGFGVVSAETLQFYFGEQG