Scaffold Ga0210406

Basic Information
Taxon OID	3300021168 Open in IMG/M
Scaffold ID	Ga0210406_10002794 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19562
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (82.76%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19562

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (82.76%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048424	Metagenome / Metatranscriptome	148	Y
F059437	Metagenome / Metatranscriptome	134	Y
F065202	Metagenome / Metatranscriptome	128	Y
F082044	Metagenome / Metatranscriptome	113	Y
F102028	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_1000279410	F059437	GGCGG	MVIGNRYLQGSPILPYANVKAYPGTDLFMDVQFVDHTNTPVIPTSISIEIDDITNSVVMAGPATLNAAGAVGSAGVPFTYSAFAATMTLQVLGSAWQMTFPYIGSQLCQVGMQFTAVDSVTGQPFTSNAVIAIVELCALATVSGLPF
Ga0210406_1000279412	F048424	AGGTGG	MMLTEELEEVGKRTRVLRDRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVAFKQEISDGPPVLGPDGKVMQFAKSKLSGKMLWFEDGPETGAIIPMQVKPGDVVEFSFRNITLVDFDRVGFPGIGDLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNFMSGAEDWHRA
Ga0210406_1000279413	F102028	AGGA	MSDKWPKIKPETVAPLRDGRPDLYNYQPTRFVSKEEATARGWKLFWTGEICVTGHRAARYVSNSSVCTDCQRIERGKVPVYGKGVPELEAARKRNYTQKNTAPAGPAQPNAGEKKFLEKYAELKDFTAAAEALGRTDSEFLAVLSWNETFREAVNRLEESMGIARTGSITEEFDWTEDKRRIFLITYANTADMKQSLRVIGATNVQFHRELTDNPDFQREFDEATQIARAVFDHAAAATAIKGDSKLLGRVAANFFPEKYGESLKMDLNVKGTMTVEQQNAELSSLLSGLARQGVLVARDSERIVGPDIIDADYSVVEPENEKQTDRDPAPEAVCVGADPNSDLVSGSE
Ga0210406_1000279416	F082044	GAGG	MSVTLKLVHEEGIRLRQQSAHKIEQKDEKTGAVSTSVNWRFVKRQATDGKTVEECQQDEDPRRVGSDGRKIQLGTYTVHVTAGMNNLVIERKGKVAPFNFKNPAIRNQVRVQYQRLVDTGRKTKDEKPVHEWKNDGQPQYLPPNTFGGAFVGDGQRAIVDEMPT
Ga0210406_100027947	F065202	AGG	MRAAAHGWKKPGGGGPSVEVGKEFMHADERKNAHKSREGRADHKREMNDWAEGKRKTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210406_10002794

Overview

Ecosystem & Geography

Associated Families

Sequences