Scaffold Ga0210406_10002403

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10002403
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21423
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F004095	Metagenome / Metatranscriptome	453	Y
F011102	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_1000240318	F002101	AGGAG	MTTPVIALPLPNLDGSPVKKKRVLLLDTSQTKRDLRADVMRKLGIDVDCAADVLEARCWWRADLYNLVLISVAGETDSRDKFCTDLRSATPPQRIAFFVGGPEYLAAAPHSDAGPAEPDADALHKEMVAALLAQAAEHSSQRWGILEACKKISSVRSVSEARSRAVRETPRPSRWAEAIEQHSAAETTKPQPLFTTEREELL
Ga0210406_1000240319	F004095	N/A	RFNRRRRQKISRRQSNEKMLKALAEKHLVAPAKQANLKEKVA
Ga0210406_100024034	F011102	GGAGG	VCLPEWRNLVSGVMIIILSASLMAQESGRALLYSPGGVWLNGNPAPNASAIFPHDVIQTQKETRAKIDTDGSTVTVQPDTIVQFEGDELVLDHGSLQVNTSRGMRVRVSCVTLIPLTQEWTRYDVIDVDGKMTVAAYQNDVKIHYQSAGTRLSKQSLSSDVTVHQGEQVTREERCGAAAKPAEVINAKGAILNSIWARGAGIAAIGILTCWALCHGDDPISPAKP