Scaffold Ga0210406_10001221

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10001221
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32417
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (81.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001275	Metagenome / Metatranscriptome	733	Y
F002518	Metagenome / Metatranscriptome	552	Y
F020084	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_1000122134	F002518	AGGA	VDNESKCPVTGKRKYSTEGEALATAAHQIATAIATKDLRAYRCSWCDAWHITKNQPDPKRVPRRK
Ga0210406_1000122135	F020084	GGAG	MGFKLFRRIGIVTMLKIAVLVFAGHGVGPTLAQIKPPESDVLPFIGTWTAVHAGTAIIVLHLRSDKGQLVGGIQVCSYSVNTETTGTVDVVTDSTLSKSLPINNIKISGRSMSFDWKDPDGDNDHWRLELTGKNDGQIVWLGLPGDVRVQPIPVSKNIPKSR
Ga0210406_100012215	F001275	AGGAG	MEEVKTEDVKRSCQAVSPNDEPCDYSATAHCPICGRWFCDAHAEDEEWHPCMLPG