Scaffold Ga0210406

Basic Information
Taxon OID	3300021168 Open in IMG/M
Scaffold ID	Ga0210406_10000569 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49902
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (76.47%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

49902

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (76.47%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002273	Metagenome / Metatranscriptome	576	Y
F003591	Metagenome / Metatranscriptome	478	Y
F014653	Metagenome / Metatranscriptome	261	Y
F021622	Metagenome / Metatranscriptome	218	Y
F082467	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_1000056913	F021622	AGG	MPANFSPPGYRWFDLLRHTPARVGMYTGVWLSVILIAWVVIANRVPFLEPLAQQRNVIATLLLAFVATIPVLRFLRSPGELLVSGLFAWSVLTLSYRILSLKFFLLQYYYSTFHIFVLGAVAYLLFATLSWIGMIVWRARAAQGTHTSR
Ga0210406_1000056916	F003591	N/A	MKQVILSILTTLMIVATTLSAMVILVRATLYVTSIESPLPRAGAILAEILLGIVLLLGTVWLATHAAVLIFAPKSDKPEGGPLG
Ga0210406_1000056930	F002273	N/A	MGEAADSGRRMKSGRESKKMGGDVIGLVAVVLTCGIPLALMYTYYRVRKLRSEERLAALARGTEIPMEPELSQFARSRRAGILLVSGGVGFIVMFAMIARVVGEPETLVASAFGILPLAVGLGYFVDAALIHRDLKAS
Ga0210406_1000056948	F082467	GAGG	LGRLKLLLLLVVLLSPAMIFVGLAQDQLIVDASKQPSPPATGRGPYTNSPGHFSRLPIRLELQIPSGSLQPDGTTLIDFVITNRGFDVISLPSSTEEGDRLSSFVLNLWFTSDAVKDAYPKDSAPSRPVKIGIPSLSAELYGRSNDPQSFRWVAPNQNMKVHASSRVQLQPGTHTVTAHAELLRLVLRDSSASWEVVGTADSETITTTLSTPAPTPR
Ga0210406_1000056949	F014653	GGAG	MKKLYAIVLISLLTTAGRADDLATSFKQAAALADAQEKERAAQAYIHLDLKPYYAKKYWPVFQSCLASTDHPDTSPFSFVVAIGKDGRVLRLYIDHETNIFACVRQALQKDEFPHPLVAPHYFHVSMSFAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210406_10000569

Overview

Ecosystem & Geography

Associated Families

Sequences