Scaffold Ga0210406_10000012

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10000012
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 317262
• Total Scaffold Genes: 291
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 216 (74.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004258	Metagenome / Metatranscriptome	446	Y
F004611	Metagenome / Metatranscriptome	431	Y
F006713	Metagenome / Metatranscriptome	366	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_10000012237	F004258	GAG	MLNASNLLPMQSDEILDDVHIRILRVTEDMRSIQQALNCAAMQAPNDPELMEALCQLPELESLHLLKTALDQMRHFLWFYMQVMTNGSEEGERLRESIRQKPSDSMTVSPRIAAAEKFKRAADAALLQMLSDGKTRKPN
Ga0210406_10000012241	F004611	N/A	VPDTTSTTSSSKSRRWTVIASGLLCGLLALVVIYPKSNAFHSPLAVVVVAAIGLVAVMLQLRFYNRERSRPVRAPLWLNILGIVFALAALFADALHLSSDMAQLMALGAIGSFSISSAVVLHAFRKRRAE
Ga0210406_1000001264	F006713	N/A	VFDVTSVLSNAAALWNLVLLLAAIVVLIGFLYGFVFRRLVRKRRIAGARDRRMLREAAERESDRTN