Scaffold Ga0214192_1032431

Overview

Basic Information

• Taxon OID: 3300021142
• Scaffold ID: Ga0214192_1032431
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1745
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F089853	Metagenome	108	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214192_10324311	F034448	N/A	MHVNNYTLPRPAESVLAQCHAVYINDPAFRMWAMKKFCREQNLSLVWSELVDTTDVSALFDEAAAFYFVDPADATFFTLKYK
Ga0214192_10324312	F015302	GGTGG	MSQDNIRSRLAKFKDKIDAKTRDEHYADTAARLDTVIGGDTQHFLRLQRVKNEWNELARAVPVGQGFLTFYDYVKEYYGVKLQFDGDNVSLAYEVVNEKKYVMFVLKFNR
Ga0214192_10324313	F040990	GGTGG	MNYYYEIDPGYDGTIFGDRWRYWCMYNCSPADNGKMCFKTHDDFVARSKRVWLENANGVYMIKPSWDARRHRVDKHEFTLVKLRARTIKWWHDEPG
Ga0214192_10324315	F100256	GAGG	MIRVSTADPAFNQAWCNASRALPVHKLERPRQYGARWREAYRCRVDGGDEFPHTWYVFDQDEDYTWFMLRWG
Ga0214192_10324316	F089853	AGG	MNEIHKRYVASVMAPTTGDGHVAYRGWTPCIEWCEKNIGDGWWYSSEGVFEFVDESYYVMFMLRWA