Basic Information | |
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Taxon OID | 3300021140 Open in IMG/M |
Scaffold ID | Ga0214168_1043421 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1095 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, WI | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F011938 | Metagenome / Metatranscriptome | 285 | Y |
F013878 | Metagenome / Metatranscriptome | 267 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214168_10434211 | F013878 | AGG | MLNLTELGVEVFIKKAKSITPFWDNYDLVIWKKDINGFTNVKGMFKENAWGTAERISVDSDGIWKLPTKHVKHFK |
Ga0214168_10434213 | F000473 | GAGG | MFINKKDINEHFKYGINEWTGEPNKPVFYTEEMRKAVHQVKKPPMLLMDIVMYPEFLALRLYEDNFLQFEGTKKEMVIDYVGKIKRLLESYGVRCELEGKPSEKVL |
Ga0214168_10434214 | F011938 | GGAGG | VKKYYDTTHVVYIHSEKCHGTVEKLGAWASIVKYNKDGMEYSELMENEEFSIIDEIVFTHIEESE |
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