Scaffold Ga0214166_1058611

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1058611
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 820
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037114	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_10586112	F037114	N/A	EKHNAFLIKNFPEIESIIAYAGAKIQTHSGLPADALPVVPRDAKYFLIAGFNLQLSSWGLYNIHTDTEGLVLYPDSIFNSATRAYSCVISIKRTAQYTEKRGGDLDIWHERYLAHELDRFYKSDGIHAHSKANRKKIPYHEGNLILFDSFMPHVVLPFKVKKKQDRRISMVVHFNYRERTDRNPYPHLEYWYXRAPHASNADL