NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214166_1037325

Scaffold Ga0214166_1037325


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1037325 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1115
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016117Metagenome / Metatranscriptome249N
F024248Metagenome / Metatranscriptome206N
F073067Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214166_10373251F016117N/AMDSIHIELSPRLGLLIAAWRNFFTRLHNQSILTDNGFQYLLALLVDKLQEALDSEFLPLVLDWLKETLPKVMRCRGTVNLINQVPAHLWTPNHIFRHDYFVCLERRANRLSIPS
Ga0214166_10373252F024248N/AVEYGSLPRVPTGLFCCGRSHLYPPAQVVPAPTSFPSSRPLQTVDPGLIARSFAVPLIQSAYGVPAVRPPILRQNALRSLSPEVQVVPPGDSDYQADEAGRVVSPRPSTSTAANGSSSFW
Ga0214166_10373253F073067N/AMEPSVRAAPTPTRPGVDERLPRADHLLRSDEAIIPEQLPGVELLAAGACINPCHERTNVFGKFYPFNRF
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