Scaffold Ga0214164_1039119

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214164_1039119

Scaffold Ga0214164_1039119

Overview

Basic Information
Taxon OID	3300021138 Open in IMG/M
Scaffold ID	Ga0214164_1039119 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1115
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050847	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214164_10391192	F050847	AGGA	MEIPELTATQLSIITETVNGTGAYSQMDPDRDLDTIEDYANWMRGVDNTNALVSLGFLEDITDKCQEALAQVTASMGRTFRVYEATKMAMQMFREGPDNKPN

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