Scaffold Ga0214164_1010763

Overview

Basic Information

• Taxon OID: 3300021138
• Scaffold ID: Ga0214164_1010763
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3159
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031756	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214164_10107631	F031756	N/A	MDAYIPEIESNITLPKSAQEAFPSLTPQEELNMRANVVALMADLTGQPILPSKNDVQDAKELAVKMAEDTKFRPEFNKYPNETLAMLAGMVAQMNVQIVDELSELKTYVVNQLVHSVEAAKDVKTKVSALRVLGEVDGVDAFKKRSEVTVKIQTMEEVEAELMELLDQVEDKYIDVEAKEIIDEVESKYE