Scaffold Ga0214206_1000302

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000302
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13804
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F017967	Metagenome	237	Y
F020298	Metagenome / Metatranscriptome	224	Y
F021910	Metagenome	216	Y
F028086	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100030213	F021910	AGGAGG	MGINRADAYYEPNDYDDRTDEIEARAWELMKVGGKFDYRTSGAISEALGDMGVKDSDDLQAVIDSGDYEALGRKLICMACEYMEGLAKSVAEFEIID
Ga0214206_100030230	F020298	AGAAG	MTAPNVYIPYPYPQSIEELEADMNAIIYQPEVPQELQDQYTNLKNSPEVQADVDQAEANSDSMDNE
Ga0214206_10003024	F028086	GGA	MTSEPVPFGGYLKTPSDACEEAFFAVYPDFFYEESTALALWTQAWQAALDHVENKKPVIQLI
Ga0214206_10003027	F002539	AGGAG	MDSNYIWTASGTDITIRWKQLGWIPPSEIQGYRDKWRYYQNLPMRQLDDAAKEQYEQVLRKAKVMRIK
Ga0214206_10003028	F017967	GGA	MGIEYYLKAPVSEYTDKDGQPKKRYQTIGIVTKTKKGDLMAKIEMIPLLGMKEGAFWCYLNVPEDKSDKPTNLADMESDVPF