Scaffold Ga0214206_1000275

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000275
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14491
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F017287	Metagenome	241	Y
F029048	Metagenome / Metatranscriptome	189	Y
F086796	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100027517	F086796	N/A	MNDYCVPYLNIQKLLKKYNNAQLKGKAELATKIAHEIADETIRLEIASVKELKKQWLS
Ga0214206_100027523	F007848	GGA	MKDFLGACLLGAVLGCMFAYGVPVKAQTVQLTDSRGYSMGTVQINGNTAQFVNPQGYTTQTATLYPNQVVITNPSISNQSITIGQPSYFVPPSPPTPMSPRVLQ
Ga0214206_100027525	F007166	GGA	MDEMYQVMTEMEQRLELALSDMENGIDLTQDDIDVIRAACGKPSNKRNQLLQTVFNDFGKVFGGNHATV
Ga0214206_100027528	F029048	AGGAG	MLSHIRDVIGDKAKISTEPFGVDEERQLIAFEVNDLAAVIKDVIQTCADCCVNATDRQAILELLN
Ga0214206_100027532	F017287	AGG	MEDYIRRVFEGEAPCDKCDQALDCKENELACRAFSYYVRHGTFHEYTVRAPTNYLFNLIFKDDDVGLKNYYKNVKGEQSDLL