Basic Information | |
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Taxon OID | 3300021131 Open in IMG/M |
Scaffold ID | Ga0214206_1000275 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14491 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (62.86%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007166 | Metagenome / Metatranscriptome | 356 | Y |
F007848 | Metagenome | 343 | Y |
F017287 | Metagenome | 241 | Y |
F029048 | Metagenome / Metatranscriptome | 189 | Y |
F086796 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214206_100027517 | F086796 | N/A | MNDYCVPYLNIQKLLKKYNNAQLKGKAELATKIAHEIADETIRLEIASVKELKKQWLS |
Ga0214206_100027523 | F007848 | GGA | MKDFLGACLLGAVLGCMFAYGVPVKAQTVQLTDSRGYSMGTVQINGNTAQFVNPQGYTTQTATLYPNQVVITNPSISNQSITIGQPSYFVPPSPPTPMSPRVLQ |
Ga0214206_100027525 | F007166 | GGA | MDEMYQVMTEMEQRLELALSDMENGIDLTQDDIDVIRAACGKPSNKRNQLLQTVFNDFGKVFGGNHATV |
Ga0214206_100027528 | F029048 | AGGAG | MLSHIRDVIGDKAKISTEPFGVDEERQLIAFEVNDLAAVIKDVIQTCADCCVNATDRQAILELLN |
Ga0214206_100027532 | F017287 | AGG | MEDYIRRVFEGEAPCDKCDQALDCKENELACRAFSYYVRHGTFHEYTVRAPTNYLFNLIFKDDDVGLKNYYKNVKGEQSDLL |
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