NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000123

Scaffold Ga0214206_1000123


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000123 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)21330
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017969Metagenome237Y
F031035Metagenome183Y
F044314Metagenome154Y
F051705Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100012315F044314N/AVFDIEKIREATFAEYVRLCRLPEWKEWAWAEVKRMDEDDLFKGIKAHVLKEMKNGAVK
Ga0214206_100012328F017969GGAGGMIQTIFIPILFVCMNGNCEFMQAMRYYTRETECRATLDEQKENLRKMALKGGQMVTQIEGTCITLKNGML
Ga0214206_100012330F051705N/AMKITATFNDEEEAIKAIHSGYAWQTLHEINEILRQNRKHDLPFEQVVSQIQASVNDALAMIYPD
Ga0214206_10001235F031035GGAMKDLITLRIQDLMAKGRELEAQIHQVNGALQQCQWMLTELEKQNAPKEIADTQSAE

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