Scaffold Ga0214206_1000050

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000050
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 31493
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (23.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021090	Metagenome	220	Y
F038238	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100005020	F021090	N/A	MITINEQQLKDLEAFINTIPTAYGLPLVQFLGKLNAEQNPPVEEAKEV
Ga0214206_100005032	F038238	N/A	MNLKTNSMKLDYQGKQLKLHKRATCLLELLKKAQSEQSRQEGLLAEWRAAGHFDNVRLFTHENNYLIRIAELNDIQKRILKSYYWLIVELYSISENFMLPVNVIQ