Scaffold Ga0214206_1000047

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000047
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 32880
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (77.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F019636	Metagenome / Metatranscriptome	228	Y
F070899	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100004743	F019636	GGA	MSGRMADGVYSRKPWQAPPEAAYPPQQYIGPFASNQERLLSQSLAANTMTGQELQEYVRPPLPQIVLFPERYGYTDTEIGIGDIIELPGRAQQRVESDYSQTPNTTESTSTNSLGGSV
Ga0214206_100004746	F070899	N/A	MKNDPGLLTDSTGEGMAGAEDVRLDTQRDLSKTYYNGSKPCIECGMLLNPVQSLHMEMCPNCTRRKHSKQLKGRMA
Ga0214206_100004747	F003439	GGA	MTVNNSRSENVSLNEGATDGKYRKRRPNTTVIPGLGDQTVVQNRAGLHPYMNYGFINSEEASKVNPGK