NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000009

Scaffold Ga0214206_1000009


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)53155
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (92.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F001629Metagenome660Y
F005903Metagenome / Metatranscriptome386Y
F029042Metagenome189Y
F041723Metagenome159Y
F058000Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100000910F029042AGAAGGMIDPITAFAIAKAAISGVQEAIQMGKDLHECSGDLIKFFEHRDIVATDDVANKSKKPVSEMGQAISSVSSIFILRQAQADLKRSLIYSGQGDKWEAILAEYNRLVAERKRAEREAEAAKKHKREQLAEMVEVLFYGFCGCVAGGLICWGTLEFIIYKMRL
Ga0214206_100000917F005903GGAMISYDPRDMTWDQYNKLMEELFAANQLGNVPEDRWRDWVDGMNGIGYFVQSGVPDHRGFATWQDWAAQMTGIMSIAV
Ga0214206_100000943F058000AGGAMTAVAATIQALSTIESLSNDIDTLAVLDRQIKALTVTTKGLKEVIANQYGEGKYRGEKYGVRVTIEDRKGAVDMDKLCAAFGITEEQLNSFRGESSAVIKVTPIA
Ga0214206_100000947F041723AGGAMSEKELSPLARQLLGNNNHVKFYTQQEFDASLAIAKAEIMTVAIQTSKQVIMIERQACADLANEAGFPDLANAIINRIPSQRQ
Ga0214206_100000949F001629GGAGGMKLNQGKVAQGLVDDLLDKIHEYDDTLYMSTVIGVLELVKQQLINDSLEDME
Ga0214206_100000965F000952AGGAGMSTSDQEQKSINVPQHKRMAMGEKLTGQAMQPKGGEGKKPAGGLSGAKKK
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