Scaffold Ga0214176_1003961

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214176_1003961

Scaffold Ga0214176_1003961

Overview

Basic Information
Taxon OID	3300021128 Open in IMG/M
Scaffold ID	Ga0214176_1003961 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 20AUG2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1842
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F055384	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214176_10039615	F055384	N/A	MITKPTTTYLHAEHSTWIDLNVGTVMEVRKEGKIGYLVDHPIIEGDCVVEKSNCIEVRDEVECCVC
Ga0214176_10039616	F021232	N/A	MRPQQTYIIFTASDEVYCTAESYDLANEIIAADGLINAIVQQVNHITNIKEGNPVTISYENTSTYDCTSDDVNDVCHEDHY

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