Scaffold Ga0214193_1007416

Overview

Basic Information

• Taxon OID: 3300021127
• Scaffold ID: Ga0214193_1007416
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1573
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026196	Metagenome / Metatranscriptome	198	N
F085118	Metagenome / Metatranscriptome	111	N
F105037	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214193_10074161	F085118	N/A	VDPIDLQAYTEEMGIMNKCQLMDTILPGRVHLTMQFIDLINDLVHKKYENQYPAWAENIIEVTTQLINIDPRWELKIVLLTCGHVVLRNYDCTCDPPFFPLRVREKEFSRLRAKTITINDLIDKRNLLTRKLINTILERVVEESYSQYKLSWVSEVSKIIRQILNIDPGWELKYIKEQFKCLKIEHKVCKCGQQE
Ga0214193_10074162	F026196	N/A	MWPTGMSESSNSCNNITSSCEKNTIGLNQPNGKYFTSLGLWQRRDKLVEELINLINATKVNKSGADSIKIQEYSKIQSIIEEQREIDPDWHLVIRQQGEGCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFVKELRRVEPNRLPCLREVSRNPSKESKA
Ga0214193_10074163	F105037	N/A	MSTYKIVDFTTGAEDEKMVTSHLFHERDLALRGVALILATIRDNTTLEENLGGYKELHKYIQILKKLDPKWRLGLYYIGNCIRLKHYSCDCHSFL