Scaffold Ga0214211_1004360

Overview

Basic Information

• Taxon OID: 3300021125
• Scaffold ID: Ga0214211_1004360
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F014823	Metagenome / Metatranscriptome	259	N
F021930	Metagenome / Metatranscriptome	216	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214211_10043602	F021930	N/A	MSDQDLRRVTDLLKEVEFEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVIKSKKDTVDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRFTK
Ga0214211_10043603	F014823	N/A	MSKKSNKSKEGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRNLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQPIAVAEEKVDLPESLEIL
Ga0214211_10043604	F007918	N/A	MCDTTLEESDPFLNLEQDMEIGTNQELSSIKQELLSILTNVEALTEAMDRVILKEERRREQFNILCSSINYLFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVAIEPDLKSMKIEMEKVLSQQRIEKFQTNPQQEEQRPQKG