Basic Information | |
---|---|
Taxon OID | 3300021125 Open in IMG/M |
Scaffold ID | Ga0214211_1000718 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5868 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 7 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F019779 | Metagenome / Metatranscriptome | 227 | N |
F026196 | Metagenome / Metatranscriptome | 198 | N |
F031758 | Metagenome / Metatranscriptome | 181 | N |
F039102 | Metagenome / Metatranscriptome | 164 | N |
F040464 | Metagenome / Metatranscriptome | 161 | N |
F043229 | Metagenome / Metatranscriptome | 156 | N |
F096608 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214211_10007182 | F039102 | N/A | MNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKVDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPKLVEFMTETSKATHSDKVKPIETEEVPKSSISN |
Ga0214211_10007183 | F019779 | N/A | MKDHPAIDFIPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIINRGSDFIIHGLETLDEQLDIIATRIDTENKKEEILKNIRKGFSIIDDIILYTTTFINEANKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI |
Ga0214211_10007184 | F031758 | N/A | MSVNKSQEKELLIKDLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHKVISLIDEVNTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPTIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK |
Ga0214211_10007185 | F043229 | N/A | MTQKGVKLEIETIEECGCEPHECYCRHSKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDIIDHTIPWNSARNKLRYIDLCQTINKLKIIHPDWEMDLEDSKNHYICRCCSCLEKRKMYQQTLDETRSEKSTPYKESRNKFSN |
Ga0214211_10007186 | F096608 | N/A | MNPKIELVKEILQIIDTLTPMEIKTIPESVVLRLYQLKKRVKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRINSLWRMDTSLVVEFINSTPLKEEREKEKNELPENLVDKEDLSP |
Ga0214211_10007187 | F040464 | N/A | MDKKTRSYKNKVYTFKYKTTNPMVSLEWLRRGYAFVGQTQEHLKDILKELTLKMRTMTDKEIEKDLRKGLKVTGDITLELSRVVRQGLEQKRTFKGLLGTLIETKNWALIKLILEATEELKERNSSSPLLFSIAKEILRELQRIQAIIPIKELKQMETSLIDIQYWKLTRHLRI |
Ga0214211_10007189 | F026196 | N/A | MWPTRMSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLRLWQRRDKLVEELINLINATKVIKSEADSIKIQEYSKIQSIIEEQREIDPDWHLVIRQQGEDCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFVKELRRVEPNRLPCLREVSRNPSKESKA |
⦗Top⦘ |