NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214211_1000718

Scaffold Ga0214211_1000718


Overview

Basic Information
Taxon OID3300021125 Open in IMG/M
Scaffold IDGa0214211_1000718 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5868
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F026196Metagenome / Metatranscriptome198N
F031758Metagenome / Metatranscriptome181N
F039102Metagenome / Metatranscriptome164N
F040464Metagenome / Metatranscriptome161N
F043229Metagenome / Metatranscriptome156N
F096608Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214211_10007182F039102N/AMNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKVDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPKLVEFMTETSKATHSDKVKPIETEEVPKSSISN
Ga0214211_10007183F019779N/AMKDHPAIDFIPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIINRGSDFIIHGLETLDEQLDIIATRIDTENKKEEILKNIRKGFSIIDDIILYTTTFINEANKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI
Ga0214211_10007184F031758N/AMSVNKSQEKELLIKDLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHKVISLIDEVNTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPTIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK
Ga0214211_10007185F043229N/AMTQKGVKLEIETIEECGCEPHECYCRHSKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDIIDHTIPWNSARNKLRYIDLCQTINKLKIIHPDWEMDLEDSKNHYICRCCSCLEKRKMYQQTLDETRSEKSTPYKESRNKFSN
Ga0214211_10007186F096608N/AMNPKIELVKEILQIIDTLTPMEIKTIPESVVLRLYQLKKRVKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRINSLWRMDTSLVVEFINSTPLKEEREKEKNELPENLVDKEDLSP
Ga0214211_10007187F040464N/AMDKKTRSYKNKVYTFKYKTTNPMVSLEWLRRGYAFVGQTQEHLKDILKELTLKMRTMTDKEIEKDLRKGLKVTGDITLELSRVVRQGLEQKRTFKGLLGTLIETKNWALIKLILEATEELKERNSSSPLLFSIAKEILRELQRIQAIIPIKELKQMETSLIDIQYWKLTRHLRI
Ga0214211_10007189F026196N/AMWPTRMSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLRLWQRRDKLVEELINLINATKVIKSEADSIKIQEYSKIQSIIEEQREIDPDWHLVIRQQGEDCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFVKELRRVEPNRLPCLREVSRNPSKESKA

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