NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214199_1004804

Scaffold Ga0214199_1004804


Overview

Basic Information
Taxon OID3300021124 Open in IMG/M
Scaffold IDGa0214199_1004804 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1824
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049484Metagenome / Metatranscriptome146Y
F091205Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214199_10048041F049484AGGAGMVTADQIKAGFVLAHLAGVEMYQKIGERDACGFGWVDVYVDRTNSKQAKELIKAGFRKDY
Ga0214199_10048044F091205AGGAGMTQLKDMQGKIIKVGDRVAMVSYHNAGSLVIGVVEKLGTVRAQVRPVQASFTNIVPTVASIGSTELIKL

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