Scaffold Ga0214173

Basic Information
Taxon OID	3300021121 Open in IMG/M
Scaffold ID	Ga0214173_101524 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021121 Open in IMG/M

Scaffold ID

Ga0214173_101524 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3045
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3045

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013275	Metagenome / Metatranscriptome	272	N
F023520	Metagenome / Metatranscriptome	209	N
F024962	Metagenome / Metatranscriptome	203	N
F028152	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214173_1015241	F023520	N/A	MATTKEGKYVKCCDTKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLINKILEGVDSIDTSKEWSHLDNKSKFIEIKLAMTELRLCYPLWKLNKYDIEKYSTCLCPNCDSIDVAGGKTLKKLGKLTLA
Ga0214173_1015242	F024962	AGAAG	MKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSVENITGLDQLLSSKIIDTLEIYLEALEEANIDERQRKLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWIAEMPKDN
Ga0214173_1015244	F028152	N/A	MDNIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRALLVLQPGPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPTFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKEKTNFEITEVKKTSPYEYKDPREVDFKIPKIKNETKVVTRVRNPTYLDFLYRP
Ga0214173_1015246	F013275	GGA	MEDFINPYKDVKLKTHLLWMTLSTIANYSSVGNISSKYVRAYLAIMVWLLITFNSDRSGAQRLIMAFLYLEFNSIDRIIEAVNHSAIIIKAAMLCMGLSSILVNPEMNYEQAIVLTILLAVAEYIPYQWEIETLIPRAIKYFKIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214173_101524

Overview

Ecosystem & Geography

Associated Families

Sequences