Scaffold Ga0214204_1001164

Overview

Basic Information

• Taxon OID: 3300021119
• Scaffold ID: Ga0214204_1001164
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4123
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F046173	Metagenome / Metatranscriptome	151	N
F047014	Metagenome / Metatranscriptome	150	Y
F054566	Metagenome / Metatranscriptome	139	N
F055422	Metagenome / Metatranscriptome	138	N
F073069	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214204_10011642	F047014	N/A	MSFQVNEARDQWIRYLINFTEAWGKIIEAKKGKEAEHYCARIVNIIQKLRKLDQQWYLENSVPERNLIPIQHSSQSSYHTLQGA
Ga0214204_10011643	F073069	N/A	MTSKDTVSAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSITKITKEKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGMLTEARRRKWTRFY
Ga0214204_10011644	F046173	GAG	MLSLKDREIYEIIIVEIENYKNSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKHILEQYLTGKSIGVQLYIKEIDTFYKEKLIGRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVIEIDSKLINLTKLLNYITEKQKE
Ga0214204_10011645	F041008	N/A	MPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVESVMEHLFEYYLTSEYSQKLRIPLKGAKPVTNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLRMMYEYLIENFNPHVVTKG
Ga0214204_10011646	F054566	AGG	MEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKTKQTNKDAN
Ga0214204_10011649	F055422	AGG	MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISMQPHHIRNTSPPNRDRNPPDRNRDSLDIDNYSETEPLITEV