Scaffold Ga0214208_1005216

Overview

Basic Information

• Taxon OID: 3300021117
• Scaffold ID: Ga0214208_1005216
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1393
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F036561	Metagenome / Metatranscriptome	169	N
F042163	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214208_10052161	F042163	N/A	MHLTVKITEQVEKKLEAVLKGRYDNRTIWMYYKVSLQVLRDTIENLIACHHTTHPLAEKDLYYEQNKVQIVDWI
Ga0214208_10052163	F007918	N/A	MSETTVEESDPFSKQEIEEIKQELLSILANVESVTEAMNRAVLKEEDRREQFRTLCSLIDHSFGENIEMIEKRKDDLKKIDPSLQAIDYKLSTRMERLREVAIKSDLKSMKIEMEKVLSQQRIEKFQTNPQQEEQRPQKG
Ga0214208_10052164	F036561	N/A	FRSLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYKQSRSEKEIEDLQSTTVDEKKIDSPESLVT