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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021117 Open in IMG/M |
| Scaffold ID | Ga0214208_1000415 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5509 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031355 | Metagenome / Metatranscriptome | 182 | Y |
| F038566 | Metagenome / Metatranscriptome | 165 | Y |
| F048775 | Metagenome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214208_100041511 | F031355 | N/A | MIQEIKLTGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDYEGHKMDIRVIVFCPTIMSSANPIYETLKYLDEDDIIMDYSDDKLLNKLDEIEKEKEEIENYNKYIEVWKKYIKIDENINLLLPDELLILSKYDFKDPQEV |
| Ga0214208_10004158 | F038566 | N/A | MSKINIYVNSKNRKSDESPSNFSVIIPDGLLKCDANEYFSLSVNSFYCYNDFYQCNINSNSFKIIFRTNLNAVYLTTNYNLNIGNPNVYDLMIDINSKLSGYLTCTYNEIKNKITYTRTYAQTTNYYNMYIYCVNSGSFFGLTNNVETLILTTGTESTYPININTIKALSIGIDGDISFNYNNMESNLTNSLYKASDLIFQMGLNVPRGYLLDYQNVDGGDSFCFNLGNKDRIKYFILSVYDQDGNTISDMTDYIIHMQFTINKKNQTDTLLKSLIDYNKQIYLIVGHIFDLIYKYLNHN |
| Ga0214208_10004159 | F048775 | N/A | MDRNIKYKQVCRIGLYGDDDINTNSGTQYSLGGTYTNGKRMRFALNNALNDLKLSQNARCVVETCNIPSITNLAGKYVLVRIVTSTQDKTCDTKKFLNGNPILISMATQSTVGSTNVLYNASEFFYNINVPTTLFSNGYIDLELEVPSATANIDFITSKPLSTFFLNLIIVDEDPQITKDLTLAPPIDYKNYNVNMPIRPY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |