Scaffold Ga0194123_10036027

Overview

Basic Information

• Taxon OID: 3300021093
• Scaffold ID: Ga0194123_10036027
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3468
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -5.5789
  • Long. (^o): 29.514
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006785	Metagenome / Metatranscriptome	364	Y
F035291	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194123_100360272	F006785	GGAG	MTGGEWNTQRERKQLAADQREAEREQLRLEKRQLRDLRWAIERSTVKATDWADLLTLQQAHGKEGPLQLWRELVPYWRDCQRVNHGADIPAECFPQIAGLFTRTDAPAPATRRKPAASSSRKTRSDAGKARKVRTPKG
Ga0194123_100360274	F035291	N/A	MIGEHHAHHAMQPQTPKPSPALLERIDRLTGCAGHWILIRDGEPETDCSHQWHQTPEDHLQTCLAERWRDVSLGFVPSYCGFSDYANTGLVGLSNYRVLTDPASTPDPHCGILEVGYGWNGRGVVLDLLRVPADVLETVEALESYPLISEDDHSELETEAVLSVWNGDSIRERVRTLQDLGLSVFAARRDSAPWELQPLWESILECCNEYPTANA