NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194123_10036027

Scaffold Ga0194123_10036027


Overview

Basic Information
Taxon OID3300021093 Open in IMG/M
Scaffold IDGa0194123_10036027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3468
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-5.5789Long. (o)29.514Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006785Metagenome / Metatranscriptome364Y
F035291Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0194123_100360272F006785GGAGMTGGEWNTQRERKQLAADQREAEREQLRLEKRQLRDLRWAIERSTVKATDWADLLTLQQAHGKEGPLQLWRELVPYWRDCQRVNHGADIPAECFPQIAGLFTRTDAPAPATRRKPAASSSRKTRSDAGKARKVRTPKG
Ga0194123_100360274F035291N/AMIGEHHAHHAMQPQTPKPSPALLERIDRLTGCAGHWILIRDGEPETDCSHQWHQTPEDHLQTCLAERWRDVSLGFVPSYCGFSDYANTGLVGLSNYRVLTDPASTPDPHCGILEVGYGWNGRGVVLDLLRVPADVLETVEALESYPLISEDDHSELETEAVLSVWNGDSIRERVRTLQDLGLSVFAARRDSAPWELQPLWESILECCNEYPTANA

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