Scaffold Ga0194133_10322030

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10322030
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 915
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_103220302	F020860	N/A	MNITKVKKLAEGGYALYAIDPKTKQESQVGYIGENLTLEAWLPQGVKVENS
Ga0194133_103220303	F016115	AGGAG	LKILEESFTSKGFKLQQIKRDGDVAIYKKQLDDPEAYSSHYEVIAIKKHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTSIEDANKRFNYLQEKLNNYIVTSILPSGEKRGRGRPRKNPLTEKENIVE
Ga0194133_103220304	F010746	AGTAG	MTYHCAVSGEAIPPERVEALIVLGVPEPLWTKKEYSQVKKLKAVYAGDDGSNDIVICDNVDGGNLFDNEVAETEIDN