Scaffold Ga0194133_10289410

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10289410
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 999
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_102894102	F021097	AGG	MQRNHLSDSCVAIVLGTGCGLLLSVGGQKLLNQHYKNTCHERPGHNLIYTKGFLGDTYYCVNAKYMN
Ga0194133_102894103	F015587	N/A	MTALNIRKNLAAILVNTAAAVENAKVPTKVGMTEKLNEYRTRAAALIMPNDMAFIIQPKQGN