Basic Information | |
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Taxon OID | 3300021091 Open in IMG/M |
Scaffold ID | Ga0194133_10022089 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6253 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
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Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -4.8915 | Long. (o) | 29.586 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020907 | Metagenome / Metatranscriptome | 221 | Y |
F039496 | Metagenome | 163 | Y |
F088307 | Metagenome / Metatranscriptome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0194133_100220893 | F020907 | GGAG | MTDEQLLNSLQGTMATIDPYSVKKEAVDEYRIDTIEERLTRIEDKVDLLITQLKIEFYKK |
Ga0194133_100220897 | F088307 | GGAG | MTTDQEILDNTALKVSQILRISVGEIDKTKFVYLYTLLYNMMGQGPDGESCKEGDLNMRHWLNTHNDHLGFCPASRLTDEGSMRRIISYLESFL |
Ga0194133_100220898 | F039496 | AGGAG | MTDISKLSYKELQKLAKQINERKEVLRKTKDCVEGYKITFCVKFNPFTSVLNNPEDFGDYLANDVANLIVNDFGLQQSDVSNFEVECMTDEDKEDWGSFWENEDDN |
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