NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194133_10022089

Scaffold Ga0194133_10022089


Overview

Basic Information
Taxon OID3300021091 Open in IMG/M
Scaffold IDGa0194133_10022089 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6253
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020907Metagenome / Metatranscriptome221Y
F039496Metagenome163Y
F088307Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0194133_100220893F020907GGAGMTDEQLLNSLQGTMATIDPYSVKKEAVDEYRIDTIEERLTRIEDKVDLLITQLKIEFYKK
Ga0194133_100220897F088307GGAGMTTDQEILDNTALKVSQILRISVGEIDKTKFVYLYTLLYNMMGQGPDGESCKEGDLNMRHWLNTHNDHLGFCPASRLTDEGSMRRIISYLESFL
Ga0194133_100220898F039496AGGAGMTDISKLSYKELQKLAKQINERKEVLRKTKDCVEGYKITFCVKFNPFTSVLNNPEDFGDYLANDVANLIVNDFGLQQSDVSNFEVECMTDEDKEDWGSFWENEDDN

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