Scaffold Ga0194133_10022089

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10022089
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6253
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020907	Metagenome / Metatranscriptome	221	Y
F039496	Metagenome	163	Y
F088307	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_100220893	F020907	GGAG	MTDEQLLNSLQGTMATIDPYSVKKEAVDEYRIDTIEERLTRIEDKVDLLITQLKIEFYKK
Ga0194133_100220897	F088307	GGAG	MTTDQEILDNTALKVSQILRISVGEIDKTKFVYLYTLLYNMMGQGPDGESCKEGDLNMRHWLNTHNDHLGFCPASRLTDEGSMRRIISYLESFL
Ga0194133_100220898	F039496	AGGAG	MTDISKLSYKELQKLAKQINERKEVLRKTKDCVEGYKITFCVKFNPFTSVLNNPEDFGDYLANDVANLIVNDFGLQQSDVSNFEVECMTDEDKEDWGSFWENEDDN