Scaffold Ga0194133_10011563

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10011563
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9729
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F015082	Metagenome / Metatranscriptome	257	Y
F025689	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1001156310	F010762	GGAG	MNETTLEVAFKEWWEASYGRPPGTHAVMTHVAFAAHMLELMELMQDAERPAA
Ga0194133_1001156313	F025689	N/A	MNPLVHTMEAQFHGAANANMLRQLHAAKDWNALLEYALLLAESEASQKSQIRWLIAEAMRSCSVQDWHIQAAKELLAGRD
Ga0194133_100115636	F015082	N/A	MDDSDIYWTFVTASKYAGSFYKALAHAGLAADPGNKQRLLTAFPEFAATYGPASRLHRTMREGVAA