NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194133_10011563

Scaffold Ga0194133_10011563


Overview

Basic Information
Taxon OID3300021091 Open in IMG/M
Scaffold IDGa0194133_10011563 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9729
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010762Metagenome299Y
F015082Metagenome / Metatranscriptome257Y
F025689Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0194133_1001156310F010762GGAGMNETTLEVAFKEWWEASYGRPPGTHAVMTHVAFAAHMLELMELMQDAERPAA
Ga0194133_1001156313F025689N/AMNPLVHTMEAQFHGAANANMLRQLHAAKDWNALLEYALLLAESEASQKSQIRWLIAEAMRSCSVQDWHIQAAKELLAGRD
Ga0194133_100115636F015082N/AMDDSDIYWTFVTASKYAGSFYKALAHAGLAADPGNKQRLLTAFPEFAATYGPASRLHRTMREGVAA

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