Scaffold Ga0194133_10003381

Overview

Basic Information

• Taxon OID: 3300021091
• Scaffold ID: Ga0194133_10003381
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22777
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (60.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.8915
  • Long. (^o): 29.586
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016800	Metagenome / Metatranscriptome	244	Y
F032252	Metagenome / Metatranscriptome	180	Y
F038911	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1000338111	F032252	GGA	MKLYRYKKDQNLYLLYEMWMPYYKLQAVPYFPNQGILAKSKRSISMNDFVVVAER
Ga0194133_1000338112	F016800	GGA	MLEAYTDYPIGKLGDTEFEKAPIRKCTILTWDRSKYCDVLVYFVDEDGDLRGHITNFKQWYLYKNEARLDDGVQFTDDELKTLPWTY
Ga0194133_1000338117	F038911	N/A	MVEKIKFVSVTRTICPRTQIHYLDAVSDDGMHWYAEMTPHQEKWLVYQKLWTKDPQQPYPFN