Scaffold Ga0210404_10442037

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10442037
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 731
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032401	Metagenome	180	Y
F038595	Metagenome / Metatranscriptome	165	Y
F068176	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_104420371	F068176	N/A	MTRRLHEDPMSPQTAQAFLDGLPRMRAALRGSRHILNPVAYARHMHELDADEREAKAILRRAQLRLVAW
Ga0210404_104420372	F032401	AGGA	MKPMKLAEVRKHTGRELTVEEAAQYVSPGQSDTLIRNQACALSLHSWSNTATDWLRLEACLVLLADKRRQK
Ga0210404_104420373	F038595	AGGAG	MYTLMSFVIPLVLVHHGFNSVVLKIISAIKSRLKYWRETSNK