Scaffold Ga0210404_10001757

Overview

Basic Information

• Taxon OID: 3300021088
• Scaffold ID: Ga0210404_10001757
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9171
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003278	Metagenome / Metatranscriptome	496	Y
F004875	Metagenome / Metatranscriptome	420	Y
F006902	Metagenome / Metatranscriptome	362	Y
F081559	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210404_100017571	F004875	GAGG	MRTFSAFALAILRAGALVSVVLLLSGLGLAQKVVTARATIPFEFWAEGHEFQAGDYVFDNEFPSSATIHREGTNSSIGVSIILYAVPEEKENPRVIFVRRDGKYFLFELWSVQGRYVVTAEFEHRGEASEQQRQVPLTIVESHDE
Ga0210404_1000175710	F006902	GAGG	MWKITTRGFTLEEVLIMAAMNLLTSAETAAERENRASQKSKGDQDGN
Ga0210404_100017574	F081559	GAG	MLTNQEPDWNIDDLTDTEICAAIRYLETDRRTEDKHDADQQDKDNGVVICVCLYTLVLGCLAFMWFYWR
Ga0210404_100017578	F003278	GGAG	MLKISLVDNARQRRVIVEGKLIAPWAAELRSACEKARGDLRDRELVVEMKHISTISQEGENVILELINGGIRFRCHGVFTKHVVKELTRRASRNPGTRASD