NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000245

Scaffold Ga0210404_10000245


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000245 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32379
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003165Metagenome / Metatranscriptome504Y
F007543Metagenome / Metatranscriptome349Y
F080279Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000024512F080279GGAGMSMFDFFLGALSLAPLGLFLLFWRMFPRDRGVHPIYRESGIEMIGNGTGVQDMTAEAAQETG
Ga0210404_1000024514F007543AGGAGMDSNYVFLCGVMWCKFGQKDAGNELLRAAGSGDPDMKALAWAMFAKGVRRLKELEKRMQRSSRAVLEEGLCG
Ga0210404_1000024515F003165AGGAGGMAKVIEFYVPKNFRKPLKWARALQCGTIIEFCSPTKKSA

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