Scaffold Ga0206683_10019324

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10019324
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4089
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009460	Metagenome / Metatranscriptome	317	N
F020173	Metagenome	225	N
F030152	Metagenome	186	Y
F054773	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_100193241	F030152	AGGAGG	MKITKAAIQALATQSVKDQYSVETDKAIYLESVIDAGGFDINLTDRPTQWDRCIDWLEAA
Ga0206683_100193244	F009460	AGGAG	MAKWDLSKLEDCASVGAHIDEDSSAPTQPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLEKRL
Ga0206683_100193248	F054773	AGGAGG	MTKQENIISVVSEAVEKAWEGSASAKEASEKYLVMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLNKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEAQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
Ga0206683_100193249	F020173	GGA	MICASCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEEEE