Scaffold Ga0179596_10050838

Overview

Basic Information

• Taxon OID: 3300021086
• Scaffold ID: Ga0179596_10050838
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1719
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032356	Metagenome / Metatranscriptome	180	N
F040668	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179596_100508381	F040668	GGAG	MPTPYQAEEKFHEALRALIGAAPQRKRLENAYLDHLSDLQDAALPISQQTKFVQLRDTLTHGKQLDAEIAIEAMSDDEVAEATRQILTLYDGILDAARSGSLPR
Ga0179596_100508382	F032356	AGGAG	VAPTSLPSANDTSPHRGVGDLNNDYRARRALEEEERAQRRRIDLEEQRSDLNPPKVRIRAWEKVHGLRMPADSTHPILEVIAGDTRLTLVEVREEQQARIAESTLRRPQTP