Scaffold Ga0206677_10025530

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10025530
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3432
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F052604	Metagenome / Metatranscriptome	142	Y
F074740	Metagenome	119	Y
F079332	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1002553010	F052604	N/A	MITTKNQAIQFLTTMQHLFPFVHPEDDLTKINPSFNYEQVSYLNARFDECYEILPDPCSTILDEIRPKMPMFNSKIK
Ga0206677_1002553012	F079332	N/A	MNTIKQELSENAGILAQQIAEVTIDQMYDTINNQLEYLNIDLDGDDYYEMLECITELTIKNIINLLN
Ga0206677_100255302	F000918	N/A	MYQTNSQAWDEVMRGIAESERRTQICQDMFGQDNLKGLTPEQQDLFWASV
Ga0206677_100255309	F074740	N/A	MKNNKVIKVEHRWCESEDRWIYLEYNEQNKVCGMNFMQGDEYDVFKTQYAENDKGLIEFYETMLYTFPIEKNSVEWITFINKVMWAYCSADQIRAKY