Basic Information | |
---|---|
Taxon OID | 3300021085 Open in IMG/M |
Scaffold ID | Ga0206677_10020494 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4003 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004952 | Metagenome | 417 | Y |
F005843 | Metagenome / Metatranscriptome | 388 | Y |
F009460 | Metagenome / Metatranscriptome | 317 | N |
F020173 | Metagenome | 225 | N |
F054773 | Metagenome | 139 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0206677_100204941 | F009460 | AGGAG | MAKWDLSKLEDCASVGAHIDEDSSTPTQPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEE |
Ga0206677_100204942 | F005843 | GGTGG | MTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPFPDVRPQPRPTQENEHG |
Ga0206677_100204945 | F054773 | AGGAGG | MTKQENIISVVSEAVEKAWEGSASAKEASEKYLVMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLNKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATGEDLEQAIMHETSRSKHHEAQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE |
Ga0206677_100204946 | F020173 | GGA | MICASCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWHNEEEEE |
Ga0206677_100204947 | F004952 | GGAG | MNLTHTHEFLITHITDSGTGFGVRTDNGESVHISPRLLQQAHANLDDICTGIIVQNAVEEQRERTPWVAAYVQERRAARDVLAATYGLDDGDRFAKDEDGNTVVVAGAGEPKPKQVDWADVQRKILSMLQSDDVTYCETADIADVVGVEPRKLSQHLENMHARGEICRAHVNQRANQQRASLVLWSINADVYK |
⦗Top⦘ |