Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10020494 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10020494 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4003
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4003

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004952	Metagenome	417	Y
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F020173	Metagenome	225	N
F054773	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100204941	F009460	AGGAG	MAKWDLSKLEDCASVGAHIDEDSSTPTQPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEE
Ga0206677_100204942	F005843	GGTGG	MTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPFPDVRPQPRPTQENEHG
Ga0206677_100204945	F054773	AGGAGG	MTKQENIISVVSEAVEKAWEGSASAKEASEKYLVMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLNKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATGEDLEQAIMHETSRSKHHEAQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
Ga0206677_100204946	F020173	GGA	MICASCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWHNEEEEE
Ga0206677_100204947	F004952	GGAG	MNLTHTHEFLITHITDSGTGFGVRTDNGESVHISPRLLQQAHANLDDICTGIIVQNAVEEQRERTPWVAAYVQERRAARDVLAATYGLDDGDRFAKDEDGNTVVVAGAGEPKPKQVDWADVQRKILSMLQSDDVTYCETADIADVVGVEPRKLSQHLENMHARGEICRAHVNQRANQQRASLVLWSINADVYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10020494

Overview

Ecosystem & Geography

Associated Families

Sequences