Scaffold Ga0206677_10018718

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10018718
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4269
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029758	Metagenome / Metatranscriptome	187	Y
F058909	Metagenome / Metatranscriptome	134	Y
F093896	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100187184	F029758	AGGAG	MIENDRLNAVEHIWYAESDRWIYIERYASGYLGLNCMQGDEYEFFKNHWCEIDRGMSEFYSTMKNDLMKLRAEMSELEFIDKVMWIYLESRMNVERYK
Ga0206677_100187186	F058909	N/A	MVMELTNVEINVLLVALDHMEEEISDLMSERTLRGDMWKERLDACESIRTKIKQVC
Ga0206677_100187187	F093896	N/A	MNLTPNERNLIIASLDHMEEHLFIIYEAGDITLDTFNLRMEAWKTAYKKIW