Scaffold Ga0206677_10017654

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10017654
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4446
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F014732	Metagenome / Metatranscriptome	260	Y
F029432	Metagenome	188	Y
F065113	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1001765413	F000126	N/A	MRDYSITRKKGEWYDARVIDSYGNKYQNYFETASEANDWIYYIWEKEEWFNSVDSQELLAKAIENCKRLDKNINVREI
Ga0206677_1001765414	F029432	GAG	MKYPRIVGWSVVITTWTSCGVGLSYLQEQEQGNEEIVNTAESMIEWIGHDVESGKLDSTIADTYIVNLEEIITDSRK
Ga0206677_1001765415	F065113	N/A	MYETLEHWKQYKQKQESTDNSTKLVSEYDKESFDKWMKDLITRNGTTKI
Ga0206677_100176542	F014732	N/A	MKTKEELEVNLAALKLLEAETGIKHENFKQQVQDTEKKLEDINKPELTPLQFDKIQEAVEEGVGNFSFDDEDNYDKSFAMEYDGKVYLDSIDLTCTHELVEKIVEEVYKLFTEAECPTEEQE