Scaffold Ga0206677_10006251

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10006251
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9142
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100062512	F052547	AGG	MGIITNNKSAAQADKDFDLTFRKGHEVKVQFNCEILSGCEFKCKGCFVNKLGSNVGEFDKLNDAIDLFNNEGYRVSTINIGPTDLFGNNNIITLLQNETFVKCLSKVSTIQFVTTLENINYQVIKLLNDIPKKDGFMYDCNIALQPPVDWDRMEERLELLNDFKDDLNYYFVYNMGNDDEYNSEVLAMNYLADLRFDTIIQLNPSFFRAKKSKVQKHLIEKWKGYDFSDDLYPKTIVDKAQGGSLELNYTFCNNRFFWTPFVYDIALIGTEEFEVKDVNDIDSWIVPKDIQFTKQLRYSSKADNCSTCSNLMTCIDKGVLSYMEHHSLTACVFPGVFS
Ga0206677_100062514	F080057	GGA	MLTDEWKNIVTKGHRLEEFTSVSSMTQYKIQVNLEILEGCSYMCPGCFVKRKGNWNPNSIATFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNQRLADAISMIPKDNRNIQHNCSILGSLSEKDIEGKIKAIENSPLGKAVEAWDVQIALDLNRLMNDQKYLDALDKRVNTFKNSSLNFEISMATNIVQGVEDIIYEAIEFVRTRYETVIEVLPSVVRSFNHSAKHGNKLFEWNEMLSKLSIDTKRFKEKFHFLQGDVSHKVFHYAVLSIYHGDMYLSPFVYENAQIHTDDFKVDNGWLWLPDADISDYILNKKNEIVQRQIKESSDKECGSCKYLNICANRMVPMIMDTVFKGRKECILNKEVIELFDDEIYRGCS
Ga0206677_100062516	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKDFIRSITDQGILVDEMLIGPTDFLASENFYEVMPHLEDIINENSPILAFVSTLIDGDLERFVKYISNNINIDTEIEIGIATNPYNFFSIPYLERTKKALAYLDENLEHEITYTFVINIRDYNLDYAELHAYAIDKFDTILDFVPSVSRSHKAHIILATLDKFNEYFNVLSRDSTLNNIMIDHSHAGMNYTVLNYKKGEWYLSPFMYENMAIYDDMFKVDSLADATRITEEQIERAKGTECEECPMFFSCYNRKIISLRDYLGVDRCIAPKENMLNNIHNYNGPAQTMYEWDGYSVENDKNGYRKKFLVTKDDDPELERLRNISYVSKT
Ga0206677_100062517	F042905	AGAAG	MITKLNSTYAGYYKYDEEKSPTNIDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGAYHPDEITIGPTDIFDAENFSEIMNHPYMEKLYGISGVGFTSTLLQPYSEVKEKLAKIWSLYKNIHRVPDIDFKIVLDIDKYLDNDLDEWYKNLELFKYGSVQFRVNYHKDVFKRIGYNDLCQKVFDDFNAPIIITPSFLTDRNARGKVDQHLANFRRDMIEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYINPFLYDVIIQRTPQFETTMDNNTLYDNIDYAQQVDDCNGCQYMMSCAERNIHLYMESRGLENCVALKEYMYASH