Basic Information | |
---|---|
Taxon OID | 3300021085 Open in IMG/M |
Scaffold ID | Ga0206677_10003098 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 14216 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (27.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031840 | Metagenome / Metatranscriptome | 181 | N |
F041775 | Metagenome / Metatranscriptome | 159 | Y |
F072343 | Metagenome / Metatranscriptome | 121 | Y |
F086721 | Metagenome / Metatranscriptome | 110 | N |
F096845 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0206677_1000309816 | F031840 | N/A | MNQSTSTMKTFDDLTFQPHANLQDLGVQASLTLDNGYAFSVVGNTEGGDFFYGDHPNTYEVAVFNQRGDFVPLGKHDDVLAHQSPLQISKLIKQFDLDGILHEKLLVNIKQDNIQENACK |
Ga0206677_1000309818 | F041775 | N/A | MRLNDPHHLQIQDLDALEANELAMAFIHDKLIEPMQENNLLDEDAFSLLNVVGGALKAIANKAHSYETLYENKTNASFYRN |
Ga0206677_1000309823 | F096845 | AGG | MSTNGIAKLNAKLRTIGFQLAQAEMRGMKGGNYFARKLAHGILLNQLYDLEKRA |
Ga0206677_1000309839 | F072343 | N/A | MHTRREIDHILDDINKIIANKKTSNKESEDDKAMLKHLYDTINLKTDNGKRAKGMWTDSPEFVSIQ |
Ga0206677_100030987 | F086721 | N/A | MKIKDIIFLKANDNQVSAHLYYSTEDVVCESMSSIGVSRKQAIFNLCKQGKLSWDLFAEAKSLALTKKDPRFEKKTFVSRNSVRDQRLADICDDMRCSVREAVAFLDRGVVPCGW |
⦗Top⦘ |