NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10001940

Scaffold Ga0206677_10001940


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10001940 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18754
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (57.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028319Metagenome / Metatranscriptome192Y
F050275Metagenome / Metatranscriptome145N
F058189Metagenome / Metatranscriptome135N
F082265Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000194010F082265N/AMYTVEFEHDEIAITIMDDKGVHGDIKVRAYDDIVYITQDDEDLDVEFILEMSPHMWEELMTAIHSKEGFFKRV
Ga0206677_1000194026F058189GAGVKYSVGIDFSLPNMYDLYWKEFGHKLDDKDLYYADKRILPVVTGFIITAKEIMWPVYTLMEALDLTLETARIFVTNPQRKLMIHRDCVADSNTLRQWAINIPIANCDMGTNEWFADEDNDFGKEKSVPGGSALAPEWFDNNYKVSESNVLNGIKLIRTDVMHRSNNTGNDNRRAVLSLRGDPKITYKQAKEKINDHNRRCA
Ga0206677_1000194029F028319GAGGMTPQEIAEYKLRWMRGTPYSVRLHSDLDTQGKTWCRRNIERHQWKMDTWTDNYEHTFFFETEEHALQFEQQWPRFTNQ
Ga0206677_100019409F050275AGGAVINNKDILVFDFDFNKSTLLDFWKQNQDNTQPYSDKRFGRFVMNNWRILNDIELEYADKLNKYFDIDTIPKFYVLKANTILFPHTDQDTTCSINFLLSEGAAPVRFGENEYYYRTALLNTTRTHSVDKYPKDRILFKLSVKDEDFSIVKQKILNTLARS
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