Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10000408 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10000408 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40419
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (22.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40419

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (22.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007723	Metagenome / Metatranscriptome	346	Y
F031120	Metagenome / Metatranscriptome	183	Y
F032238	Metagenome	180	Y
F057374	Metagenome / Metatranscriptome	136	N
F072235	Metagenome / Metatranscriptome	121	Y
F099110	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000040820	F032238	N/A	MGKIIYMEDTIKVMKPKLAKKLIDEGDVVHTENSAYLVKDNKNLDIRKTLDGTPLVELDDPMALIVNTKVPHKWILQDTETGEIYRGTTETTIGKQWEKVIEINDRK
Ga0206677_1000040834	F031120	GGA	MDYTITQVLAGWGGLIWMTITFPLYITYILWRNNWKVLHSVSDSWYKLKQHERHEEIFFTIFTYLLGIGTLLQYYLNPIFFFAGMGFFWVGTQTQFRGESIKETIHYLGAVLGILGSLIGLGLTFSWIPLLLMLVGVGVMKLLKINNFLWWAEMLAFILVIVGLWVG
Ga0206677_1000040844	F099110	N/A	MKVLIKPQVKKPWSKEMYDYNDKVADIMKDEIQLQLESAYSKRNIDKINELVTLCGGIKFGDGFEIEEMYESCLEELTMVQNYWLNEEWDYAVKQNVVNDVVPYKFVGYDK
Ga0206677_1000040859	F057374	N/A	MSKLKVKFSFILLLASSLLSSQNFVGENFRLSADSGNVVITFEDQNSDGTYIGGVLTKSFGKLTITKKEFQTKFIPNLKKISGKKDYEIVEDSYRLDKYSFDTEIVFIQVGNKIGSITKEEIKKLRKL
Ga0206677_1000040865	F072235	N/A	MTNEQLTEEVLIKSHSLGIKDEVWELARELKEQDRTLDMHGSIQQAFQELTK
Ga0206677_1000040877	F007723	N/A	MIKAIKSKMLTYLFKDWVTNETDLETLKVSKQFIRKREVEITGHVPVLGFRSHLPQED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10000408

Overview

Ecosystem & Geography

Associated Families

Sequences