Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10000162 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10000162 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	59713
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (20.55%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

59713

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (20.55%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F004631	Metagenome / Metatranscriptome	430	Y
F035779	Metagenome / Metatranscriptome	171	Y
F038191	Metagenome / Metatranscriptome	166	Y
F054413	Metagenome / Metatranscriptome	140	N
F058116	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000016232	F004631	N/A	MKYVKRYEAYLNEARRPGKPYHGSKILVFDLDDTLVISSAKIKVCNKKTGECYSLTPEEFNTYEKGEHEELNFDEFKSLEIMKAGKLIEYYLKIFKEAYKSKLAVGIVTARDDRKMIHKWLREHVGYRIDYELIFAVNDPIHKFKGNISDRKKAAFKELIEMGYNDMQFYDDDDANLKLVKSLEDEYDGINISTIKAIK
Ga0206677_1000016239	F054413	N/A	MANLKKKYNRTKSELVRALNKSDRRTVVLSIKVVETSKIKEHLIYECLYLDNGKEKNVTIIAQDITNAMLKLEPYLGAGIPDTTTNLILGSERYPNVPLDPPV
Ga0206677_1000016244	F058116	N/A	MSDKKENKFFSEIKNQIIAGVGLVIAAGFGIFITNMEGWLSPKKEPTPVVVQDSIPAQPQIIINNIVEKKEAPKVIVKEKKEDEITW
Ga0206677_1000016262	F002033	N/A	MSKFNTFLADHGTKIVIALLVLTYFKSCGIDSDVEKIKKDLRVTNAEVDSLTNRLETKIISEQDMIRLIKEVPAWKTLRIEEISDKERISINALEEKED
Ga0206677_1000016272	F038191	N/A	MTEKQLIELDFTRNDETAENSGAPNDFHYYTYDVGNFSLISPASDEVEEDGWYVEAFETPEIRFTNPTEVNILLTLLTNNYTEK
Ga0206677_100001629	F035779	N/A	MVKLFEDFLNEKNLQVQVRDHVIRYRLTYQYGKGGFITMASNSKELDKQIEIDNPMEIGKAIENSINAELKKLRQLFTVEEDHGYQGAGYAFYIVFDDLLKLLNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10000162

Overview

Ecosystem & Geography

Associated Families

Sequences